Wesleyan Science, Mathematics and Computer Science Publications

2006

Aaron G, Yuste R (2006) Reverse optical probing (ROPING) of neocortical circuits. Synapse 60, 437-440.

Barth H, La Mont K, Lipton J, Dehaene S, Kanwisher N, Spelke E (2006) Non-symbolic arithmetic in adults and young children. Cognition 98, 199-222.

Dixit SB, Beveridge DL (2006) Structural bioinformatics of DNA: a web-based tool for the analysis of molecular dynamics results and structure prediction. Bioinformatics 22, 1007-1009.

Dixit SB, Ponomarev SY, Beveridge DL (2006) Root mean square deviation probability analysis of molecular dynamics trajectories on DNA. Journal of Chemical Information and Modeling 46, 1084-1093.

Zhao Y, Kormos BL, Beveridge DL, Baranger AM (2006) Molecular dynamics simulation studies of a protein-RNA complex with a selectively modified binding interface. Biopolymers 81, 256-269.

Bhullar AS, Blumel R, Koch PM (2006) Ghost orbit spectroscopy. Physical Review E 73, Art. No. 016211, pp 1-18.

Blumel R (2006a) Analytical solution of the compressed, one-dimensional delta atom via quadratures and exact, absolutely convergent periodic-orbit expansions. Journal of Physics a-Mathematical and General 39, 8257-8282.

Blumel R (2006b) Comment on 'Quantum chaos in elementary quantum mechanics' by Yu Dabaghian and R Jensen. European Journal of Physics 27, L1-L4.

Blumel R, Garrick-Bethell I (2006) Quantum mechanics of the dynamic Kingdon trap. Physical Review A 73, Art. No. 023411, pp. 1-5.

Bertetto, L.D. and D. Bodznick (2006)  In vivo adaptive plasticity in the electrosensory system of the little skate, Raja erinacea.  Soc. Neurosci. Abst. 817.24.

Bodznick, D.A., G.J. Rose and L.D. Bertetto (2006).  Response properties of granule cells recorded in vivo from the cerebellar-like electrosensory nucleus in skates.  Soc. Neurosci. Abst. 817.16.

Burke AC (2006) Patterning domains in the vertebrate mesoderm. Developmental Biology 295, 337-338.

2006    Chernoff, B., and C. D. Barbour. Family Atherinopsidae. Pp. 184-202. In: Freshwater Fishes of Mexico, Miller, R.R., W. L. Minckley and S. Norris (eds), University of Chicago Press, Chicago.

2006 Sidlauskas, B. B. Chernoff, and A. Machado-Allison. Geographic and environmental variation in Bryconops cf. melanurus (Ostariophysi: Characidae) from the Brazilian Pantanal. Ichthyological Research, 53: 24-33. 11

Sidlauskas B, Chernoff B, Machado-Allison A (2006) Geographic and environmental variation in Bryconops sp cf. melanurus (Ostariophysi : Characidae) from the Brazilian Pantanal. Ichthyological Research 53, 24-33.

Cohan FM (2006) Towards a conceptual and operational union of bacterial systematics, ecology, and evolution. Philosophical Transactions of the Royal Society B-Biological Sciences 361, 1985-1996.

Ward DM, Bateson MM, Ferris MJ, Kuhl M, Wieland A, Koeppel A, Cohan FM (2006) Cyanobacterial ecotypes in the microbial mat community of Mushroom Spring (Yellowstone National Park, Wyoming) as species-like units linking microbial community composition, structure and function. Philosophical Transactions of the Royal Society B-Biological Sciences 361, 1997-2008.Collins KL, Trenk AN (2006) The distinguishing chromatic number. Electronic Journal of Combinatorics 13.

Comfort WW, Gillam WD (2006) The embeddability ordering of topological spaces. Topology and Its Applications 153, 2192-2198.

Danner N, Pollett C (2006) The weak pigeonhole principle for function classes in S1/2. Mathematical Logic Quarterly 52, 575-584.

Danner N, Royer JS (2006) Adventures in time and space. Acm Sigplan Notices 41, 168-179.

Devoto SH, Stoiber W, Hammond CL, Steinbacher P, Haslett JR, Barresi MJF, Patterson SE, Adiarte EG, Hughes SM (2006) Generality of vertebrate developmental patterns: evidence for a dermomyotome in fish. Evolution & Development 8, 101-110.

Dierker L, Lloyd-Richardson E, et al. (2006) The proximal association between smoking and alcohol use among first year college students. Drug and Alcohol Dependence 81, 1-9.

Dierker LC, Canino G, Merikangas KR (2006) Association between parental and individual psychiatric/substance use disorders and smoking stages among Puerto Rican adolescents. Drug and Alcohol Dependence 84, 144-153.

Prakash A, Mallick P, Whiteaker J, Zhang HD, Paulovich A, Flory M, Lee H, Aebersold R, Schwikowski B (2006) Signal maps for mass spectrometry-based comparative proteomics. Molecular & Cellular Proteomics 5, 423-432.

Wu X, Dube MA, Fry A J (2006) Electrophilic nitration of triphenylamines as a route to high oxidation potential electrocatalysts. Polynitration, nitrodebromination, and bromine dance. Tetrahedron Letters 47, 7667-7669.

Hong, T. and Grabel, L. (2006) Migration of F9 parietal endoderm is regulated by the ERK pathway.  Journal of Cellular Biochemistry. 97(6):1339-49.

Gruen, L., and Grabel, L. (2006). Scientific and ethical roadblocks to human embryonic stem cell therapy. Stem Cells 24: 2162-2176.

Gutmann JT, Turrin BD (2006) The age of Crater Elegante, a maar in the Pinacate Volcanic Field, Sonora, Mexico. Geological Society of America Abstracts with Programs 38, 22.

Ball RN, Hager AW (2006) A new characterization of the continuous functions on a locale. Positivity 10, 165-199

Percy JR, Gryc WK, Wong JCY, Herbst W (2006) Self-correlation analysis of the photometric variability of T Tauri stars. Publications of the Astronomical Society of the Pacific, 118, 1390-1395.

Winn JN, Hamilton CM, Herbst WJ, Hoffman JL, Holman MJ, Johnson JA, Kuchner MJ (2006) The orbit and occultations of KH 15D. Astrophysical Journal 644, 510-524.

Fallscheer C, Herbst W (2006) Testing the disk-locking paradigm: An association between U-V excess and rotation in NGC 2264. Astrophysical Journal, 647, L155-L158.

Herbst W, Dhital S, Francis A, Lin L, Tresser N, Williams E (2006) Evidence for differential rotation on a T tauri star. Publications of the Astronomical Society of the Pacific, 118, 828-832.

Nordhagen S, Herbst W, Rhode KL, Williams EC (2006) The variability and rotation of pre-main-sequence stars in IC 348: Does intracluster environment influence stellar rotation? Astronomical Journal, 132, 1555-1570.

Nordhagen S, Herbst W, Williams EC, Semkov E (2006) The recurrent eclipse of an unusual pre-main-sequence star in IC 348. Astrophysical Journal, 646, L151-L154.

Antony E, Khubchandani S, Chen SY, Hingorani MM (2006) Contribution of Msh2 and Msh6 subunits to the asymmetric ATPase and DNA mismatch binding activities of Saccharomyces cerevisiae Msh2-Msh6 mismatch repair protein. DNA Repair 5, 153-162.

Matecic M, Martins-Taylor K, Hickman M, Tanny J, Moazed D, Holmes SG (2006) New alleles of SIR2 define cell-cycle-specific silencing functions. Genetics 173, 1939-1950.

Yencho BM, Johnston KV, Bullock JS, Rhode KL (2006) The effect of substructure on mass estimates of galaxies. Astrophysical Journal 643, 154-161.

Weiss M, Mendez-Bermudez JA, Kottos T (2006) Resonance width distribution for high-dimensional random media. Physical Review B 73, Art. No. 045103.

Cohen D, Kottos T, Schanz H (2006) Rate of energy absorption by a closed ballistic ring. Journal of Physics a-Mathematical and General 39, 11755-11771.

Mendez-Bermudez JA, Kottos T, Cohen D (2006) Parametric invariant random matrix model and the emergence of multifractality. Physical Review E, 73 (3): Art. No. 036204 Part 2.

Hiller M, Kottos T, Geisel T (2006) Complexity in parametric Bose-Hubbard Hamiltonians and structural analysis of eigenstates. Physical Review A,  73 (6): Art. No. 061604.

Hiller M, Kottos T, Ossipov A (2006) Bifurcations in resonance widths of an open Bose-Hubbard dimer. Physical Review A, 73(6): Art. No. 063625.

Hiller M, Cohen D, Geisel T, Kottos T, et al. (2006) Wavepacket dynamics, quantum reversibility, and random matrix theory. Annals of Physics, 321 (5): 1025-1062.

Ng GS, Bodyfelt J, Kottos T (2006) Critical fidelity at the metal-insulator transition. Physical Review Letters, 97, 256404.

De Marco G, Gargano L, Kranakis E, Krizanc D, Pelc A, Vaccaro U (2006) Asynchronous deterministic rendezvous in graphs. Theoretical Computer Science 355, 315-326.

Perry, E. B., A. Koeppel, D. Krizanc, A. P. Rooney, J. Sikorski, E. Nevo, and F. M. Cohan. 2006. Identifying the fundamental units of diversity among Bacillus isolates from ‘Evolution Canyon’ III. Israel Journal of Ecology and Evolution 52:543-552.

Seltzer JC, Kurtz MM, Thime W (2006)  The Schizophrenia Rehabilitation Program at the Institute of Living: Combining neurocognitive, motivational and vocational rehabilitation.  The Behavior Therapist, 29, 30-35. 

Kurtz MM (2006) Symptoms versus neurocognitive skills as correlates of everyday functioning in patients with severe mental illness: A review and synthesis. Expert Review of Neurotherapeutics. 6, 47-56.

Kurtz MM, Wexler BE (2006) Differences in performance and learning proficiency on the Wisconsin Card Sorting Test in schizophrenia:  Do they reflect distinct neurocognitive subtypes with distinct functional profiles? Schizophrenia Research 81, 167-171.

Baker EK, Kurtz MM, Astur RS (2006) Virtual reality assessment of medication compliance in patients with schizophrenia.  Cyberpsychology and Behavior, 9, 224-229.

Wade CH, Umbarger MA, McAlear MA (2006) The budding yeast rRNA and ribosome biosynthesis (RRB) regulon contains over 200 genes. Yeast 23, 293-306.

Whalen DJ, Laurent-Muehleisen SA, Moran EC, Becker RH (2006) Optical properties of radio-selected narrow-line Seyfert 1 galaxies. Astronomical Journal 131, 1948-1960.

Desroches LB, Filippenko AV, Kaspi S, Laor A, Maoz D, Ganeshalingam M, Li W, Moran EC, et al. (2006) Multiwavelength monitoring of the dwarf Seyfert 1 galaxy NGC 4395. III. Optical variability and X-ray/UV/optical correlations. Astrophysical Journal 650, 88-101.

Flohic H, Eracleous M, Chartas G, Shields JC, Moran EC (2006) The central engines of 19 liners as viewed by Chandra. Astrophysical Journal 647, 140-160.

O'Neill PM, Kaspi S, Laor A, Nandra K, Moran EC, et al. (2006) Multiwavelength monitoring of the dwarf Seyfert 1 galaxy NGC 4395. II. X-ray and ultraviolet continuum variability. Astrophysical Journal 645, 160-169.

Smith NK, Larsen JT, Chartrand TL, Cacioppo JT, Katafiasz HA, Moran KE (2006) Being bad isn't always good: Affective context moderates the attention bias toward negative information. Journal of Personality and Social Psychology 90, 210-220.

Augustyn KE, Wojtuszewski K, Hawkins ME, Knutson JR, Mukerji I (2006) Examination of the premelting transition of DNA A-tracts using a fluorescent adenosine analogue. Biochemistry 45, 5039-5047.

Kang L, Novick SE (2006) Microwave spectra of the 1,1-difluoro-2-propynyl radical, F₂C C CH, Journal of Chemical Physics, 125, 054309.

Kang L, Minei AJ, Novick SE (2006) The microwave spectrum of phosphaacetyInitrile, H₂P C C C N, Journal of Mol. Spectrosc., 126, 101101.

Wood GPF, Radom L, Petersson GA, Barnes EC, Frisch MJ, Montgomery JA (2006) A restricted-open-shell complete-basis-set model chemistry. Journal of Chemical Physics 125.

Keske J, Lin W, Pringle W, Novick S (2006) High resolution studies of tropolonein the S₀ and S₁ electronic states: isotope driven dynamics in the zero-point energy levels. Journal of Chemical Physics, 124, 074309.

Adediran SA, Cabaret D, Flavell RR, Sammons JA, Wakselman M, Pratt RF (2006) Synthesis and beta-lactamase reactivity of alpha-substituted phenaceturates. Bioorganic & Medicinal Chemistry 14, 7023-7033.

Adediran SA, Kumar I, Pratt RF (2006) Deacylation transition states of a bacterial DD-peptidase. Biochemistry 45, 13074-13082.

Adediran SA, Lohier JF, Cabaret D, Wakselman M, Pratt RF (2006) Synthesis and reactivity with beta-lactamases of a monobactam bearing a retro-amide side chain. Bioorganic & Medicinal Chemistry Letters 16, 869-871.

Royer DL (2006) CO2-forced climate thresholds during the Phanerozoic. Geochimica Et Cosmochimica Acta 70, 5665-5675.

Royer DL, Wilf P (2006) Why do toothed leaves correlate with cold climates? Gas exchange at leaf margins provides new insights into a classic paleotemperature proxy. International Journal of Plant Sciences 167, 11-18.

Chen C, Jiang L, Michalczyk R, Russu IM (2006) Structural energetics and base-pair opening dynamics in sarcin-ricin domain RNA. Biochemistry 45, 13606-13613.

Scheibe KE (2006a) In memoriam: Theodore R. Sarbin. International Journal of Clinical and Experimental Hypnosis 54, 367-369.

Scheibe KE (2006b) Theodore R. Sarbin. American Journal of Clinical Hypnosis 48, 87-88.

Scheibe KE (2006c) Theodore R. Sarbin (1911-2005) - Obituary. American Psychologist 61, 249-250.

Scowcroft P (2006) Nonnegative solvability of linear equations in certain ordered rings. Transactions of the American Mathematical Society 358, 3535-3570.

Seamon JG, Berko JR, Sahlin B, Yu YL, Colker JM, Gottfried DH (2006) Can false memories spontaneously recover? Memory 14, 415-423.

Seamon JG, Philbin MM, Harrison LG (2006) Do you remember proposing marriage to the Pepsi machine? False recollections from a campus walk. Psychonomic Bulletin & Review 13, 752-756.

Sinnamon HM (2006) Decline in hippocampal theta activity during cessation of locomotor approach sequences: Amplitude leads frequency and relates to instrumental behavior. Neuroscience 140, 779-790.

Becker SR, Poole PH, Starr FW (2006) Fractional Stokes-Einstein and Debye-Stokes-Einstein relations in a network-forming liquid. Physical Review Letters 97, Art. No. 055901.Starr FW, Sciortino F (2006) Model for assembly and gelation of four-armed DNA dendrimers. Journal of Physics-Condensed Matter 18, L347-L353.

Rivera JL, Starr FW, Paricaud P, Cummings PT (2006) Polarizable contributions to the surface tension of liquid water. Journal of Chemical Physics 125.

Mazza MG, Giovambattista N, Starr FW, Stanley HE (2006) Relation between rotational and translational dynamic heterogeneities in water. Physical Review Letters 96, Art. No. 057803.

Stemler SE, Elliott JG, Grigorenko EL, Sternberg RJ (2006) There's more to teaching than instruction: seven strategies for dealing with the practical side of teaching. Educational Studies 32, 101-118.

Stemler SE, Grigorenko EL, Jarvin L, Sternberg RJ (2006) Using the theory of successful intelligence as a basis for augmenting AP exams in Psychology and Statistics. Contemporary Educational Psychology 31, 344-376.

Biro FM, Striegel-Moore RH, Franko DL, Padgett J, Bean JA (2006) Self-esteem in adolescent females. Journal of Adolescent Health 39, 501-507.

Cachelin FM, Phinney JS, Schug RA, Striegel-Moore RH (2006) Acculturation and eating disorders in a Mexican American community sample. Psychology of Women Quarterly 30, 340-347.

Cachelin FM, Striegel-Moore RH (2006) Help seeking and barriers to treatment in a community sample of Mexican American and European American women with eating disorders. International Journal of Eating Disorders 39, 154-161.

Cachelin FM, Striegel-Moore RH, Regan PC (2006) Factors associated with treatment seeking in a community sample of European American and Mexican American women with eating disorders. European Eating Disorders Review 14, 422-429.

Striegel-Moore RH, Franko DL, May A, Ach E, Thompson D, Hook JM (2006a) Should night eating syndrome be included in the DSM? International Journal of Eating Disorders 39, 544-549.

Striegel-Moore RH, Franko DL, Thompson D, Affenito S, Kraemer HC (2006b) Night eating: Prevalence and demographic correlates. Obesity 14, 139-147.

Striegel-Moore RH, Franko DL, Thompson D, Barton B, Schreiber GB, Daniels SR (2006c) Caffeine intake in eating disorders. International Journal of Eating Disorders 39, 162-165.

Striegel-Moore RH, Thompson D, et al. (2006a) Correlates of beverage intake in adolescent girls: The National Heart, Lung, and Blood Institute Growth and Health Study. Journal of Pediatrics 148, 183-187.

Striegel-Moore RH, Thompson DR, Affenito SG, Franko DL, Barton BA, Schreiber GB, Daniels SR, Schmidt M, Crawford PB (2006b) Fruit and vegetable intake: Few adolescent girls meet national guidelines. Preventive Medicine 42, 223-228.

Ackerly D, Sultan S (2006) Mind the gap: the emerging synthesis of plant 'eco-devo'. New Phytologist 170, 648-653.

Clinch K, Evans GB, Fleet GW, Furneaux RH, Johnson SW, Lenz DH, Mee SP, Rands PR, Schramm VL, Taylor Ringia EA, Tyler PC (2006) “Syntheses and Bio-Activities of the L-Enantiomers of Two Potent Transition State Analogue Inhibitors of Purine Nucleoside Phosphorylases,” Organic & Biomolecular Chemistry, 4, 1131-1139

. Taylor Ringia EA, Tyler PC, Evans GB, Furneaux RH, Murkin AS, Schramm VL (2006) “Transition State Analogue Discrimination by Related Purine Nucleoside Phosphorylases,” Journal of the American Chemical Society, 128, 7126-7127.

Barker P F, Thomas E (2006) Potential of the Scotia Sea Region for Determining the Onset and Development of the Antarctic Circumpolar Current. In: Fütterer, D.K.; Damaske, D.; Kleinschmidt, G.; Miller, H.; Tessensohn, F. (Eds.), “Antarctica: Contributions to Global Earth Science", Chapter 8.4, Springer-Verlag, p. 433-440.

Molina E, Gonzalvo C, Mancheño MA, Ortiz S, Schmitz B, Thomas E, von Salis K (2006) Integrated Stratigraphy and Chrono-stratigraphy across the Ypresian-Lutetian transition at Fortuna section (Betic Cordillera, Spain). Newsletters in Stratigraphy, 42: 23-41.

Ortiz S, Thomas E (2006) Lower-middle Eocene benthic foraminifera from the Fortuna Section (Betic Cordillera, southeastern Spain), Micropaleontology, 52: 97-150.

Smart C W, Thomas E (2006) The enigma of early Miocene biserial planktic foraminifera, Geology, 34: 1041-1044; doi: 10.1130/G23038A.1.

Thomas E, Brinkhuis H, Huber M, Röhl U (2006) An ocean view of the early Cenozoic Greenhouse World. Oceanography (Special Volume on Ocean Drilling), 19:  63-72.

Bowen G J, Bralower T J, Dickens G R, Delaney M, Kelly DC, Koch PL, Kump LR, Meng J, Sloan LC, Thomas E, Wing SL, Zachos JC (2006) Disciplinary and cross-disciplinary study of the Paleocene-Eocene Thermal Maximum gives new insight into greenhouse gas-induced environmental and biotic change. EOS Transactions AGU, v. 87 (17), p. 165, 169.

Rubin D, Goldenson N, Voth GA (2006) Failure and strengthening of granular slopes under horizontal vibration. Physical Review E 74, Art. No. 051309.

Weir M, Eaton M, Rice M (2006) Challenging the spliceosome machine. Genome Biology 7.